Hi everyone,
I’m running MRIQC on all subject with docker but running into the following problem:
docker run -it --rm -v /media/ndyxs/bidsdata/:/data:ro -v /media/ndyxs/MRIQC_output/:/out nipreps/mriqc:21.0.0rc2 /data /out participant
But, it worked but generates this log and doesn’t proceed
==================
A newer version (1.7.0) of nipy/nipype is available. You are using 1.6.1
220208-02:15:26,445 nipype.utils WARNING:
A newer version (1.7.0) of nipy/nipype is available. You are using 1.6.1
exception calling callback for <Future at 0x7f367194f730 state=finished raised BrokenProcessPool>
Traceback (most recent call last):
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 328, in _invoke_callbacks
callback(self)
File “/opt/conda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py”, line 159, in _async_callback
result = args.result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 432, in result
return self.__get_result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 388, in __get_result
raise self._exception
concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.
exception calling callback for <Future at 0x7f3671967fd0 state=finished raised BrokenProcessPool>
Traceback (most recent call last):
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 328, in _invoke_callbacks
callback(self)
File “/opt/conda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py”, line 159, in _async_callback
result = args.result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 432, in result
return self.__get_result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 388, in __get_result
raise self._exception
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 328, in _invoke_callbacks
callback(self)
File “/opt/conda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py”, line 159, in _async_callback
result = args.result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 432, in result
return self.__get_result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 388, in __get_result
raise self._exception
concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.
exception calling callback for <Future at 0x7f36719a7d90 state=finished raised BrokenProcessPool>
Traceback (most recent call last):
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 328, in _invoke_callbacks
callback(self)
File “/opt/conda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py”, line 159, in _async_callback
result = args.result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 432, in result
return self.__get_result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 388, in __get_result
raise self._exception
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 328, in _invoke_callbacks
callback(self)
File “/opt/conda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py”, line 159, in _async_callback
result = args.result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 432, in result
return self.__get_result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 388, in __get_result
raise self._exception
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 328, in _invoke_callbacks
callback(self)
File “/opt/conda/lib/python3.8/site-packages/nipype/pipeline/plugins/multiproc.py”, line 159, in _async_callback
result = args.result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 432, in result
return self.__get_result()
File “/opt/conda/lib/python3.8/concurrent/futures/_base.py”, line 388, in __get_result
raise self._exception
concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.
how to solve this problem？